ZEITLUPE enhances expression of PIF4 and YUC8 in the upper aerial parts of Arabidopsis seedlings to positively regulate hypocotyl elongation

Plant Cell Rep. 2021 Mar;40(3):479-489. doi: 10.1007/s00299-020-02643-8. Epub 2021 Jan 2.

Abstract

Microarray and genetic analyses reveal that ZTL induces the expression of genes related to auxin synthesis, thereby promoting hypocotyl elongation. ZTL is a blue-light receptor that possesses a light-oxygen-voltage-sensing (LOV) domain, an F-box motif, and a kelch repeat domain. ZTL promotes hypocotyl elongation under high temperature (28 °C) in Arabidopsis thaliana; however, the mechanism of this regulation is unknown. Here, we divided seedlings into hypocotyls and upper aerial parts, and performed microarray analyses. In hypocotyl, 1062 genes were down-regulated in ztl mutants (ztl-3 and ztl-105) compared with wild type; some of these genes encoded enzymes involved in cell wall modification, consistent with reduced hypocotyl elongation. In upper aerial parts, 1038 genes were down-regulated in the ztl mutants compared with wild type; these included genes involved in auxin synthesis and auxin response. Furthermore, the expression of the PHYTOCHROME INTERACTING FACTOR 4 (PIF4) gene, which encodes a transcription factor known to positively regulate YUCCA genes (YUCs), was also decreased in the ztl mutants. Genetic analysis revealed that overexpression of PIF4 and YUC8 could restore the suppressed hypocotyl length in the ztl mutants. Our results suggest that ZTL induces expression of YUC8 via PIF4 in upper aerial parts and promotes hypocotyl elongation.

Keywords: Hypocotyl elongation; IAA; PIF; YUC; ZTL; phyB.

MeSH terms

  • Arabidopsis / genetics*
  • Arabidopsis / growth & development
  • Arabidopsis Proteins / genetics*
  • Basic Helix-Loop-Helix Transcription Factors / genetics*
  • Cell Wall / genetics
  • Gene Expression Regulation, Plant
  • Hypocotyl / genetics
  • Hypocotyl / growth & development
  • Indoleacetic Acids / metabolism
  • Mixed Function Oxygenases / genetics*
  • Mutation
  • Phytochrome B / genetics
  • Plant Components, Aerial / genetics
  • Plants, Genetically Modified
  • Promoter Regions, Genetic
  • Seedlings / genetics
  • Seedlings / growth & development

Substances

  • Arabidopsis Proteins
  • Basic Helix-Loop-Helix Transcription Factors
  • Indoleacetic Acids
  • PHYB protein, Arabidopsis
  • PIF4 protein, Arabidopsis
  • ZTL protein, Arabidopsis
  • Phytochrome B
  • Mixed Function Oxygenases
  • YUCCA8 protein, Arabidopsis