The complete chloroplast genome sequence of Vitis vinifera Muscat Hamburg

Dinghan Guo; Dongmei Li; Hui Li; Shiping Wang; Lei Wang; Jianxin Niu; Chao Ma

doi:10.1080/23802359.2019.1698333

The complete chloroplast genome sequence of Vitis vinifera Muscat Hamburg

Mitochondrial DNA B Resour. 2019 Dec 11;5(1):117-118. doi: 10.1080/23802359.2019.1698333.

Authors

Dinghan Guo^{1

2}, Dongmei Li^{3

4}, Hui Li^{3

4}, Shiping Wang^{3

4}, Lei Wang^{3

4}, Jianxin Niu^{1

2}, Chao Ma^{3

4}

Affiliations

¹ Department of Horticulture, College of Agriculture, Shihezi University, Shihezi, China.
² Xinjiang Production and Construction Corps Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization, Shihezi, China.
³ Department of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
⁴ Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.

Abstract

Vitis vinifera Muscat Hamburg is Eurasian species, which is widely cultivated all over the world. In this study, the complete chloroplast genome of V. vinifera Muscat Hamburg is assembled for the first time. The chloroplast genome is 160,915 bp in length, and comprises a 19,072 bp small single copy region and an 89,135 bp large single copy region, which are seperated by a pair of inverted repeat regions. The chloroplast genome contains 133 genes, including 88 CDSs, 8 rRNA genes and 37 tRNA genes. The phylogenetic tree analysis showed that V. vinifera Muscat Hamburg was the closest to V. vinifera.

Keywords: Illumina sequencing; Vitis vinifera Muscat Hamburg; chloroplast genome; phylogenetic analysis.