The complete chloroplast genome sequence of Vitis davidii Foex strain 'SJTU003'

Quanyou Tian; Peining Fu; Wei Wu; Rongfang Li; Lyubka Koleva; Jiang Lu; Shiren Song

doi:10.1080/23802359.2019.1673234

The complete chloroplast genome sequence of Vitis davidii Foex strain 'SJTU003'

Mitochondrial DNA B Resour. 2019 Oct 4;4(2):3370-3371. doi: 10.1080/23802359.2019.1673234.

Authors

Quanyou Tian¹, Peining Fu¹, Wei Wu¹, Rongfang Li¹, Lyubka Koleva², Jiang Lu¹, Shiren Song¹

Affiliations

¹ Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
² Department of Plant Physiology and Biochemistry, Agricultural University, Plovdiv, Bulgaria.

Abstract

In the present study, the complete chloroplast genome of Vitis davidii Foex strain 'SJTU003' was assembled and subjected to phylogenetic analysis. This chloroplast genome of 'SJTU003' was 161,335 bp in length, including two inverted repeat regions (IRa and IRb) that were separated by a large single-copy region (89,570 bp) and a small single-copy region (19,059 bp). The genome contained 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that V. davidii is most closely related to Vitis flexuosa and Vitis amurensis.

Keywords: Illumina sequencing; Vitis davidii Foex; chloroplast genome; phylogenetic analysis.