Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study

Molecules. 2020 Dec 11;25(24):5853. doi: 10.3390/molecules25245853.

Abstract

We present a detailed computational study of the UV/Vis spectra of four relevant flavonoids in aqueous solution, namely luteolin, kaempferol, quercetin, and myricetin. The absorption spectra are simulated by exploiting a fully polarizable quantum mechanical (QM)/molecular mechanics (MM) model, based on the fluctuating charge (FQ) force field. Such a model is coupled with configurational sampling obtained by performing classical molecular dynamics (MD) simulations. The calculated QM/FQ spectra are compared with the experiments. We show that an accurate reproduction of the UV/Vis spectra of the selected flavonoids can be obtained by appropriately taking into account the role of configurational sampling, polarization, and hydrogen bonding interactions.

Keywords: MD; QM/FQ; QM/MM; UV/Vis; absorption spectrum; flavonoids.

MeSH terms

  • Computer Simulation
  • Flavonoids / chemistry*
  • Hydrogen Bonding
  • Molecular Conformation
  • Molecular Dynamics Simulation
  • Normal Distribution
  • Physical Phenomena
  • Quantum Theory
  • Spectrophotometry, Ultraviolet
  • Static Electricity
  • Ultraviolet Rays
  • Water / chemistry*

Substances

  • Flavonoids
  • Water
  • myricetin