Fine interaction profiling of VemP and mechanisms responsible for its translocation-coupled arrest-cancelation

Elife. 2020 Dec 15:9:e62623. doi: 10.7554/eLife.62623.

Abstract

Bacterial cells utilize monitoring substrates, which undergo force-sensitive translation elongation arrest, to feedback-regulate a Sec-related gene. Vibrio alginolyticus VemP controls the expression of SecD/F that stimulates a late step of translocation by undergoing export-regulated elongation arrest. Here, we attempted at delineating the pathway of the VemP nascent-chain interaction with Sec-related factors, and identified the signal recognition particle (SRP) and PpiD (a membrane-anchored periplasmic chaperone) in addition to other translocon components and a ribosomal protein as interacting partners. Our results showed that SRP is required for the membrane-targeting of VemP, whereas PpiD acts cooperatively with SecD/F in the translocation and arrest-cancelation of VemP. We also identified the conserved Arg-85 residue of VemP as a crucial element that confers PpiD-dependence to VemP and plays an essential role in the regulated arrest-cancelation. We propose a scheme of the arrest-cancelation processes of VemP, which likely monitors late steps in the protein translocation pathway.

Keywords: E. coli; Ffh; SecG; SecY; Vibrio; biochemistry; chemical biology; nascent chain; protein export.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / metabolism*
  • Escherichia coli
  • Protein Biosynthesis
  • SEC Translocation Channels / metabolism*
  • Vibrio alginolyticus

Substances

  • Bacterial Proteins
  • SEC Translocation Channels