Interrelated Mechanism by Which the Methide Quinone Celastrol, Obtained from the Roots of Tripterygium wilfordii, Inhibits Main Protease 3CLpro of COVID-19 and Acts as Superoxide Radical Scavenger

Int J Mol Sci. 2020 Dec 4;21(23):9266. doi: 10.3390/ijms21239266.

Abstract

We describe the potential anti coronavirus disease 2019 (COVID-19) action of the methide quinone inhibitor, celastrol. The related methide quinone dexamethasone is, so far, among COVID-19 medications perhaps the most effective drug for patients with severe symptoms. We observe a parallel redox biology behavior between the antioxidant action of celastrol when scavenging the superoxide radical, and the adduct formation of celastrol with the main COVID-19 protease. The related molecular mechanism is envisioned using molecular mechanics and dynamics calculations. It proposes a covalent bond between the S(Cys145) amino acid thiolate and the celastrol A ring, assisted by proton transfers by His164 and His41 amino acids, and a π interaction from Met49 to the celastrol B ring. Specifically, celastrol possesses two moieties that are able to independently scavenge the superoxide radical: the carboxylic framework located at ring E, and the methide-quinone ring A. The latter captures the superoxide electron, releasing molecular oxygen, and is the feature of interest that correlates with the mechanism of COVID-19 inhibition. This unusual scavenging of the superoxide radical is described using density functional theory (DFT) methods, and is supported experimentally by cyclic voltammetry and X-ray diffraction.

Keywords: COVID-19; celastrol; cyclic voltammetry; methide quinone; protease; thiolate.

MeSH terms

  • COVID-19 / virology
  • COVID-19 Drug Treatment
  • Coronavirus 3C Proteases / antagonists & inhibitors*
  • Coronavirus 3C Proteases / chemistry
  • Coronavirus 3C Proteases / metabolism
  • Free Radical Scavengers / chemistry
  • Free Radical Scavengers / pharmacology*
  • Humans
  • Models, Molecular
  • Pentacyclic Triterpenes
  • Plant Roots / chemistry
  • Protease Inhibitors / chemistry
  • Protease Inhibitors / pharmacology*
  • SARS-CoV-2 / drug effects
  • SARS-CoV-2 / enzymology*
  • Superoxides / metabolism
  • Tripterygium / chemistry*
  • Triterpenes / chemistry
  • Triterpenes / pharmacology*

Substances

  • Free Radical Scavengers
  • Pentacyclic Triterpenes
  • Protease Inhibitors
  • Triterpenes
  • Superoxides
  • 3C-like proteinase, SARS-CoV-2
  • Coronavirus 3C Proteases
  • celastrol