Method for Phenotypic Chemical Screening to Identify Cryptochrome Inhibitors

Methods Mol Biol. 2021:2213:17-27. doi: 10.1007/978-1-0716-0954-5_2.

Abstract

After germination, plants determine their morphogenesis, such as hypocotyl elongation and cotyledon opening, by responding to various wavelengths of light (photomorphogenesis). Cryptochrome is a blue-light photoreceptor that controls de-etiolation, stomatal opening and closing, flowering time, and shade avoidance. Successful incorporation of these phenotypes as indicators into a chemical screening system results in faster selection of candidate compounds. Here, we describe phenotypic screening for the blue-light response of Arabidopsis thaliana seedling and the resulting process that clarifies that the compound obtained in the screening is an inhibitor of cryptochromes.

Keywords: Cryptochrome; Image processing; Phenotypic screen; Photoreceptor; photomorphogenesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / growth & development
  • Arabidopsis / metabolism*
  • Arabidopsis / radiation effects
  • Cell-Free System
  • Cotyledon / anatomy & histology
  • Cotyledon / drug effects
  • Cotyledon / radiation effects
  • Cryptochromes / antagonists & inhibitors*
  • Cryptochromes / metabolism
  • Cryptochromes / radiation effects
  • Culture Media
  • Hypocotyl / anatomy & histology
  • Hypocotyl / drug effects
  • Hypocotyl / radiation effects
  • Image Processing, Computer-Assisted
  • Light
  • Phenotype
  • Protein Biosynthesis / drug effects
  • Protein Biosynthesis / radiation effects
  • Recombinant Proteins / biosynthesis
  • Seedlings / drug effects
  • Seedlings / radiation effects
  • Small Molecule Libraries / analysis*
  • Small Molecule Libraries / pharmacology

Substances

  • Cryptochromes
  • Culture Media
  • Recombinant Proteins
  • Small Molecule Libraries