Clinicopathological and immunological characterization of RNA m6 A methylation regulators in ovarian cancer

Mol Genet Genomic Med. 2021 Jan;9(1):e1547. doi: 10.1002/mgg3.1547. Epub 2020 Nov 22.

Abstract

Background: N6 -methyladenosine (m6 A) modification is one of the critical gene regulatory mechanisms implicated in cancer biology. However, the roles of m6 A regulators in ovarian cancer are still poorly understood.

Methods: We integrated multiple databases including Gene Expression Omnibus (GEO), ROC Plotter, Kaplan-Meier Plotter, and Tumor Immune Estimation Resource (TIMER) to explore clinicopathological significance of m6 A regulators in ovarian cancer.

Results: We showed that alterations in the expression of m6 A regulators were related to the malignancy and poor prognosis of ovarian cancer. We found decreased YTHDC1 and increased RBM15 expressions were associated with ovarian cancer cell metastases and HNRNPC was a predictor of paclitaxel resistance. Moreover, dysregulated m6 A regulators were enriched in the activation of cancer-related pathways. Our results further demonstrated that the level of immune cell infiltration and the expression of various immune gene markers were closely associated with the expressions of specific m6 A regulators (RBM15B, ZC3H13, YTHDF1, and IGF2BP1).

Conclusions: Our study establishes a new prognostic profile of ovarian cancer patients based on m6 A regulators, and highlights the potential roles of m6 A regulators in ovarian cancer development.

Keywords: immune infiltration; m6A regulators; ovarian cancer; survival.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine / analogs & derivatives*
  • Adenosine / metabolism
  • Biomarkers, Tumor / genetics
  • Biomarkers, Tumor / metabolism
  • Female
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Methylation
  • Nerve Tissue Proteins / genetics
  • Nerve Tissue Proteins / metabolism
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Ovarian Neoplasms / genetics*
  • Ovarian Neoplasms / immunology
  • Ovarian Neoplasms / pathology
  • RNA Processing, Post-Transcriptional*
  • RNA Splicing Factors / genetics
  • RNA Splicing Factors / metabolism
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism

Substances

  • Biomarkers, Tumor
  • IGF2BP1 protein, human
  • Nerve Tissue Proteins
  • Nuclear Proteins
  • RBM15 protein, human
  • RNA Splicing Factors
  • RNA-Binding Proteins
  • YTHDC1 protein, human
  • YTHDF1 protein, human
  • ZC3H13 protein, human
  • N-methyladenosine
  • Adenosine