Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut

Nat Commun. 2020 Nov 13;11(1):5773. doi: 10.1038/s41467-020-19585-0.

Abstract

Beneficial modulation of the gut microbiome has high-impact implications not only in humans, but also in livestock that sustain our current societal needs. In this context, we have tailored an acetylated galactoglucomannan (AcGGM) fibre to match unique enzymatic capabilities of Roseburia and Faecalibacterium species, both renowned butyrate-producing gut commensals. Here, we test the accuracy of AcGGM within the complex endogenous gut microbiome of pigs, wherein we resolve 355 metagenome-assembled genomes together with quantitative metaproteomes. In AcGGM-fed pigs, both target populations differentially express AcGGM-specific polysaccharide utilization loci, including novel, mannan-specific esterases that are critical to its deconstruction. However, AcGGM-inclusion also manifests a "butterfly effect", whereby numerous metabolic changes and interdependent cross-feeding pathways occur in neighboring non-mannanolytic populations that produce short-chain fatty acids. Our findings show how intricate structural features and acetylation patterns of dietary fibre can be customized to specific bacterial populations, with potential to create greater modulatory effects at large.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation / drug effects
  • Animals
  • Butyrates / metabolism
  • Cecum / metabolism
  • Diet
  • Dietary Fiber / pharmacology*
  • Feeding Behavior / drug effects
  • Female
  • Gastrointestinal Microbiome* / drug effects
  • Gastrointestinal Tract / drug effects
  • Gastrointestinal Tract / metabolism*
  • Gastrointestinal Tract / microbiology*
  • Genome
  • Male
  • Mannans / pharmacology
  • Metabolic Networks and Pathways / drug effects
  • Metagenomics
  • Principal Component Analysis
  • Proteome / metabolism
  • RNA, Ribosomal, 16S / genetics
  • Secondary Metabolism* / drug effects
  • Swine
  • Wood / chemistry

Substances

  • Butyrates
  • Dietary Fiber
  • Mannans
  • Proteome
  • RNA, Ribosomal, 16S
  • galactoglucomannan

Associated data

  • figshare/10.6084/m9.figshare.9816581