Upregulation of glutaminase 2 and neutrophil cytosolic factor 2 is associated with the poor prognosis of glioblastoma

Biomark Med. 2020 Nov;14(16):1585-1597. doi: 10.2217/bmm-2020-0341. Epub 2020 Nov 12.

Abstract

Background: This study aimed to identify glioblastoma prognosis-associated genes with potential diagnosis or prognosis values using integrated bioinformatics analysis. Results: In total, 1831 differentially expressed genes (DEGs) between the glioblastoma and control samples were identified and were clustered into seven weighed gene co-expression network analysis (WGCNA) modules. These DEGs were associated with different functional categories and pathways. Nine prognosis-associated DEGs (including glutaminase 2 [GLS2] and neutrophil cytosolic factor 2 [NCF2]) were identified, and the higher expression levels of GLS2 and NCF2 genes were associated with the poor prognosis of glioblastoma in 'The Cancer Genome Atlas' cohort and a clinical cohort. Conclusion: These results showed that the two genes play novel roles in the etiological and development of glioblastoma.

Keywords: Cox regression analysis; differentially expressed genes; glioblastoma; prognosis-associated genes; survival analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Biomarkers, Tumor / genetics
  • Brain Neoplasms / genetics
  • Child
  • China
  • Computational Biology / methods
  • Databases, Genetic
  • Female
  • Gene Expression / genetics
  • Gene Expression Profiling / methods
  • Gene Expression Regulation, Neoplastic / genetics
  • Gene Regulatory Networks / genetics
  • Glioblastoma / genetics*
  • Glioblastoma / metabolism
  • Glutaminase / genetics*
  • Glutaminase / metabolism
  • Humans
  • Male
  • NADPH Oxidases / genetics*
  • NADPH Oxidases / metabolism
  • Prognosis
  • Protein Interaction Maps
  • Transcriptome / genetics

Substances

  • Biomarkers, Tumor
  • NADPH Oxidases
  • NCF2 protein, human
  • GLS2 protein, human
  • Glutaminase