Classification of Severe and Critical Covid-19 Using Deep Learning and Radiomics

IEEE J Biomed Health Inform. 2020 Dec;24(12):3585-3594. doi: 10.1109/JBHI.2020.3036722. Epub 2020 Dec 4.

Abstract

Objective: The coronavirus disease 2019 (COVID-19) is rapidly spreading inside China and internationally. We aimed to construct a model integrating information from radiomics and deep learning (DL) features to discriminate critical cases from severe cases of COVID-19 using computed tomography (CT) images.

Methods: We retrospectively enrolled 217 patients from three centers in China, including 82 patients with severe disease and 135 with critical disease. Patients were randomly divided into a training cohort (n = 174) and a test cohort (n = 43). We extracted 102 3-dimensional radiomic features from automatically segmented lung volume and selected the significant features. We also developed a 3-dimensional DL network based on center-cropped slices. Using multivariable logistic regression, we then created a merged model based on significant radiomic features and DL scores. We employed the area under the receiver operating characteristic curve (AUC) to evaluate the model's performance. We then conducted cross validation, stratified analysis, survival analysis, and decision curve analysis to evaluate the robustness of our method.

Results: The merged model can distinguish critical patients with AUCs of 0.909 (95% confidence interval [CI]: 0.859-0.952) and 0.861 (95% CI: 0.753-0.968) in the training and test cohorts, respectively. Stratified analysis indicated that our model was not affected by sex, age, or chronic disease. Moreover, the results of the merged model showed a strong correlation with patient outcomes.

Significance: A model combining radiomic and DL features of the lung could help distinguish critical cases from severe cases of COVID-19.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • COVID-19 / diagnostic imaging
  • COVID-19 / physiopathology*
  • COVID-19 / virology
  • Cohort Studies
  • Female
  • Humans
  • Male
  • Middle Aged
  • SARS-CoV-2 / isolation & purification
  • Severity of Illness Index
  • Tomography, X-Ray Computed

Grants and funding

This work was supported by the National Key R&D Program of China under Grants 2017YFC1308700, 2017YFA0205200, 2017YFC1309100, and 2016YFC0102600 in part by the National Natural Science Foundation of China under Grants 82022036, 91959130, 81971776, 81771924, 6202790004, 81930053, 61622117, and 81671759, in part by the Scientific Instrument Developing Project of the Chinese Academy of Sciences under Grant YZ201672, in part by the Beijing Natural Science Foundation under Grants L182061, JQ19027 in part by the Strategic Priority Research Program of Chinese Academy of Sciences under Grant XDB 38040200, in part by the Beijing Nova Program under Grant Z181100006218046, in part by the Project of High-Level Talents Team Introduction in Zhuhai City under Grant Zhuhai HLHPTP201703, and in part by the Youth Innovation Promotion Association CAS under Grant 2017175.