A paramyxovirus-like model for Ebola virus bipartite promoters

PLoS Pathog. 2020 Nov 5;16(11):e1008972. doi: 10.1371/journal.ppat.1008972. eCollection 2020 Nov.

Abstract

Paramyxo- and filovirus nucleocapsids (NCs) have bipartite promoters at their 3' ends to initiate RNA synthesis. The 2 elements, promoter element 1 (PE1) and promoter element 2 (PE2), are separated by a spacer region that must be exactly a multiple of 6 nucleotides (nt) long. Paramyxovirus NCs have 13 nucleoprotein (NP) subunits/turn, such that PE1 and PE2 are juxtaposed on the same face of the NC helix, for concerted recognition by the viral polymerase. Ebola virus (EBOV) NCs, in contrast, have 25 to 28 subunits/turn, meaning that PE1 and PE2 cannot be juxtaposed. However, there is evidence that the number of subunits/turn at the 3' end of the EBOV NC is variable. We propose a paramyxovirus-like model for EBOV explaining why there are 8 contiguous copies of the PE2 repeat when 3 are sufficient, why expanding this run to 13 further improves minigenome performance, and why there is a limit to the number of hexa-nt that can be inserted in the spacer region.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ebolavirus / genetics*
  • Genome, Viral / genetics*
  • Hemorrhagic Fever, Ebola / virology*
  • Humans
  • Nucleocapsid / genetics
  • Nucleoproteins / genetics*
  • Paramyxovirinae / genetics*
  • Promoter Regions, Genetic / genetics*
  • Sequence Alignment

Substances

  • Nucleoproteins

Grants and funding

This work was funded by the ANR-19-CE11-0017-04 grant to IG. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.