Site-specific RNA methylation by a methyltransferase ribozyme

Nature. 2020 Nov;587(7835):663-667. doi: 10.1038/s41586-020-2854-z. Epub 2020 Oct 28.

Abstract

Nearly all classes of coding and non-coding RNA undergo post-transcriptional modification, including RNA methylation. Methylated nucleotides are among the evolutionarily most-conserved features of transfer (t)RNA and ribosomal (r)RNA1,2. Many contemporary methyltransferases use the universal cofactor S-adenosylmethionine (SAM) as a methyl-group donor. SAM and other nucleotide-derived cofactors are considered to be evolutionary leftovers from an RNA world, in which ribozymes may have catalysed essential metabolic reactions beyond self-replication3. Chemically diverse ribozymes seem to have been lost in nature, but may be reconstructed in the laboratory by in vitro selection. Here we report a methyltransferase ribozyme that catalyses the site-specific installation of 1-methyladenosine in a substrate RNA, using O6-methylguanine as a small-molecule cofactor. The ribozyme shows a broad RNA-sequence scope, as exemplified by site-specific adenosine methylation in various RNAs. This finding provides fundamental insights into the catalytic abilities of RNA, serves a synthetic tool to install 1-methyladenosine in RNA and may pave the way to in vitro evolution of other methyltransferase and demethylase ribozymes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine / analogs & derivatives
  • Adenosine / metabolism
  • Base Sequence
  • Biocatalysis
  • Guanine / analogs & derivatives
  • Guanine / metabolism
  • Methylation
  • Methyltransferases / metabolism*
  • Plasmids / genetics
  • RNA, Catalytic / metabolism*
  • RNA, Transfer / chemistry*
  • RNA, Transfer / metabolism*
  • S-Adenosylmethionine / metabolism

Substances

  • RNA, Catalytic
  • 1-methyladenosine
  • Guanine
  • S-Adenosylmethionine
  • RNA, Transfer
  • O-(6)-methylguanine
  • Methyltransferases
  • Adenosine