Identification of Putative Non-Substrate-Based XT-I Inhibitors by Natural Product Library Screening

Biomolecules. 2020 Oct 21;10(10):1467. doi: 10.3390/biom10101467.

Abstract

Fibroproliferative diseases are characterized by excessive accumulation of extracellular matrix (ECM) components leading to organ dysfunction. This process is characterized by an increase in myofibroblast content and enzyme activity of xylosyltransferase-I (XT-I), the initial enzyme in proteoglycan (PG) biosynthesis. Therefore, the inhibition of XT-I could be a promising treatment for fibrosis. We used a natural product-inspired compound library to identify non-substrate-based inhibitors of human XT-I by UPLC-MS/MS. We combined this cell-free approach with virtual and molecular biological analyses to confirm and prioritize the inhibitory potential of the compounds identified. The characterization for compound potency in TGF-β1-driven XYLT1 transcription regulation in primary dermal human fibroblasts (key cells in ECM remodeling) was addressed by gene expression analysis. Consequently, we identified amphotericin B and celastrol as new non-substrate-based XT-I protein inhibitors. Their XT-I inhibitory effects were mediated by an uncompetitive or a competitive inhibition mode, respectively. Both compounds reduced the cellular XYLT1 expression level and XT-I activity. We showed that these cellular inhibitor-mediated changes involve the TGF-β and microRNA-21 signaling pathway. The results of our study provide a strong rationale for the further optimization and future usage of the XT-I inhibitors identified as promising therapeutic agents of fibroproliferative diseases.

Keywords: TGF-β1; amphotericin B; celastrol; fibrosis; library screening; miRNA-21; molecular docking; natural products; xylosyltransferase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amphotericin B / chemistry
  • Amphotericin B / isolation & purification
  • Amphotericin B / pharmacology
  • Biological Products / chemistry
  • Biological Products / isolation & purification
  • Biological Products / pharmacology*
  • Cells, Cultured
  • Enzyme Inhibitors / isolation & purification
  • Enzyme Inhibitors / pharmacology
  • Extracellular Matrix / drug effects
  • Extracellular Matrix / genetics
  • Fibrosis / drug therapy*
  • Fibrosis / genetics
  • Fibrosis / pathology
  • Humans
  • MicroRNAs / genetics*
  • Molecular Docking Simulation
  • Myofibroblasts / drug effects
  • Pentacyclic Triterpenes / chemistry
  • Pentacyclic Triterpenes / isolation & purification
  • Pentacyclic Triterpenes / pharmacology
  • Pentosyltransferases / antagonists & inhibitors*
  • Pentosyltransferases / genetics
  • Signal Transduction / drug effects
  • Tandem Mass Spectrometry
  • Transforming Growth Factor beta1 / genetics*
  • UDP Xylose-Protein Xylosyltransferase

Substances

  • Biological Products
  • Enzyme Inhibitors
  • MIRN21 microRNA, human
  • MicroRNAs
  • Pentacyclic Triterpenes
  • TGFB1 protein, human
  • Transforming Growth Factor beta1
  • Amphotericin B
  • Pentosyltransferases
  • celastrol