Flammeovirga agarivorans sp. nov., an agar-digesting marine bacterium isolated from surface seawater

Int J Syst Evol Microbiol. 2020 Dec;70(12):6060-6066. doi: 10.1099/ijsem.0.004497. Epub 2020 Oct 21.

Abstract

A Gram-stain-negative, aerobic, gliding, reddish-orange-coloured, rod-shaped strain, designated SR4T, was isolated from surface seawater sampled at Luhuitou fringing reef (South China Sea). Phylogenetic analyses based on the 16S rRNA gene, phylogenomic analysis of single-copy gene families and whole genome data affiliated it to the genus Flammeovirga. It was most closely related to Flammeovirga yaeyamensis NBRC 100898T (97.99 % 16S rRNA gene similarity). The genome average nucleotide identity and DNA-DNA relatedness values between strain SR4T and its reference strains were less than 74.2 and 16.3 %, respectively. Growth occurred at 20-35 °C (optimum, 28 °C), pH 6.0-9.0 (optimum, pH 7.0) and in the presence of 1-6 % (w/v) NaCl (optimum, 2-4 %). The dominant fatty acids were C16 : 0, iso-C15 : 0 and C20 : 4 ω6,9,12,15c. The polar lipid profile of strain SR4T comprised phosphatidylethanolamine, two glycolipids, two aminophospholipids and three unidentified lipids. The major respiratory quinone was MK-7. The DNA G+C content of strain SR4T was 34.20 mol%. On the basis of the polyphasic evidence, strain SR4T is proposed as representing a novel species of the genus Flammeovirga, for which the name Flammeovirga agarivorans sp. nov. is proposed. The type strain is SR4T (=KCTC 82075T=MCCC 1A17137T).

Keywords: Flammeovirga agarivorans sp. nov.; Luhuitou fringing reef; surface seawater.

MeSH terms

  • Agar / metabolism*
  • Bacterial Typing Techniques
  • Bacteroidetes / classification*
  • Bacteroidetes / genetics
  • Base Composition
  • China
  • Fatty Acids / chemistry
  • Genes, Bacterial / genetics
  • Glycolipids / chemistry
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Species Specificity
  • Water Microbiology

Substances

  • Fatty Acids
  • Glycolipids
  • RNA, Ribosomal, 16S
  • Agar

Supplementary concepts

  • Flammeovirga yaeyamensis