Flexible Synthetic Carbohydrate Receptors as Inhibitors of Viral Attachment

Biochemistry. 2021 Apr 6;60(13):999-1018. doi: 10.1021/acs.biochem.0c00732. Epub 2020 Oct 23.

Abstract

Carbohydrate-receptor interactions are often involved in the docking of viruses to host cells, and this docking is a necessary step in the virus life cycle that precedes infection and, ultimately, replication. Despite the conserved structures of the glycans involved in docking, they are still considered "undruggable", meaning these glycans are beyond the scope of conventional pharmacological strategies. Recent advances in the development of synthetic carbohydrate receptors (SCRs), small molecules that bind carbohydrates, could bring carbohydrate-receptor interactions within the purview of druggable targets. Here we discuss the role of carbohydrate-receptor interactions in viral infection, the evolution of SCRs, and recent results demonstrating their ability to prevent viral infections in vitro. Common SCR design strategies based on boronic ester formation, metal chelation, and noncovalent interactions are discussed. The benefits of incorporating the idiosyncrasies of natural glycan-binding proteins-including flexibility, cooperativity, and multivalency-into SCR design to achieve nonglucosidic specificity are shown. These studies into SCR design and binding could lead to new strategies for mitigating the grave threat to human health posed by enveloped viruses, which are heavily glycosylated viroids that are the cause of some of the most pressing and untreatable diseases, including HIV, Dengue, Zika, influenza, and SARS-CoV-2.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antiviral Agents / chemical synthesis
  • Antiviral Agents / chemistry*
  • Antiviral Agents / pharmacology
  • COVID-19 / metabolism
  • COVID-19 Drug Treatment
  • Carbohydrate Metabolism / drug effects
  • Chlorocebus aethiops
  • Drug Design*
  • Humans
  • Molecular Docking Simulation
  • Receptors, Artificial / chemical synthesis
  • Receptors, Artificial / chemistry*
  • Receptors, Virus / antagonists & inhibitors
  • Receptors, Virus / metabolism*
  • SARS-CoV-2 / drug effects
  • Small Molecule Libraries / chemical synthesis
  • Small Molecule Libraries / chemistry*
  • Small Molecule Libraries / pharmacology
  • Vero Cells
  • Virus Attachment / drug effects*
  • Virus Diseases / drug therapy
  • Virus Diseases / metabolism
  • Zika Virus / drug effects
  • Zika Virus Infection / drug therapy
  • Zika Virus Infection / metabolism

Substances

  • Antiviral Agents
  • Receptors, Artificial
  • Receptors, Virus
  • Small Molecule Libraries