Passivating Nucleobases Bring Charge Transfer Character to Optically Active Transitions in Small Silver Nanoclusters

Mohammed A Jabed; Naveen Dandu; Sergei Tretiak; Svetlana Kilina

doi:10.1021/acs.jpca.0c06974

Passivating Nucleobases Bring Charge Transfer Character to Optically Active Transitions in Small Silver Nanoclusters

J Phys Chem A. 2020 Oct 29;124(43):8931-8942. doi: 10.1021/acs.jpca.0c06974. Epub 2020 Oct 20.

Authors

Mohammed A Jabed¹, Naveen Dandu², Sergei Tretiak³, Svetlana Kilina¹

Affiliations

¹ Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108, United States.
² Argonne National Laboratory, Lemont, Illinois 60439, United States.
³ Center for Nonlinear Studies, Center for Integrated Nanotechnologies, and Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States.

PMID: 33079551
DOI: 10.1021/acs.jpca.0c06974

Abstract

DNA-wrapped silver nanoclusters (DNA-AgNCs) are known for their efficient luminescence. However, their emission is highly sensitive to the DNA sequence, the cluster size, and its charge state. To get better insights into photophysics of these hybrid systems, simulations based on density functional theory (DFT) are performed. Our calculations elucidate the effect of the structural conformations, charges, solvent polarity, and passivating bases on optical spectra of DNA-AgNCs containing five and six Ag atoms. It is found that inclusion of water in calculations as a polar solvent media results in stabilization of nonplanar conformations of base-passivated clusters, while their planar conformations are more stable in vacuum, similar to the bare Ag₅ and Ag₆ clusters. Cytosines and guanines interact with the cluster twice stronger than thymines, due to their larger dipole moments. In addition to the base-cluster interactions, hydrogen bonds between bases notably contribute to the structure stabilization. While the relative intensity, line width, and the energy of absorption peaks are slightly changing depending on the cluster charge, conformations, and base types, the overall spectral shape with five well-resolved bands at 2.5-5.5 eV is consistent for all structures. Independent of the passivating bases and the cluster size and charge, the low energy optical transitions at 2.5-3.5 eV exhibit a metal to ligand charge transfer (MLCT) character with the main contribution emerging from Ag-core to the bases. Cytosines facilitate the MLCT character to a larger degree comparing to the other bases. However, the doublet transitions in clusters with the open shell electronic structure (Ag₅ and Ag₆⁺) result in appearance of additional red-shifted (<2.5 eV) and optically weak band with negligible MLCT character. The passivated clusters with the closed shell electronic structure (Ag₅⁺ and Ag₆) exhibit higher optical intensity of their lowest transitions with much higher MLCT contribution, thus having better potential for emission, than their open shell counterparts.