A genetic memory initiates the epigenetic loop necessary to preserve centromere position

EMBO J. 2020 Oct 15;39(20):e105505. doi: 10.15252/embj.2020105505. Epub 2020 Sep 18.

Abstract

Centromeres are built on repetitive DNA sequences (CenDNA) and a specific chromatin enriched with the histone H3 variant CENP-A, the epigenetic mark that identifies centromere position. Here, we interrogate the importance of CenDNA in centromere specification by developing a system to rapidly remove and reactivate CENP-A (CENP-AOFF/ON ). Using this system, we define the temporal cascade of events necessary to maintain centromere position. We unveil that CENP-B bound to CenDNA provides memory for maintenance on human centromeres by promoting de novo CENP-A deposition. Indeed, lack of CENP-B favors neocentromere formation under selective pressure. Occasionally, CENP-B triggers centromere re-activation initiated by CENP-C, but not CENP-A, recruitment at both ectopic and native centromeres. This is then sufficient to initiate the CENP-A-based epigenetic loop. Finally, we identify a population of CENP-A-negative, CENP-B/C-positive resting CD4+ T cells capable to re-express and reassembles CENP-A upon cell cycle entry, demonstrating the physiological importance of the genetic memory.

Keywords: CENP-A; CENP-B; centromere; chromatin; chromosome segregation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • CD4-Positive T-Lymphocytes / cytology
  • CD4-Positive T-Lymphocytes / metabolism*
  • CRISPR-Cas Systems
  • Cell Cycle
  • Cell Line, Tumor
  • Centromere / genetics
  • Centromere / metabolism*
  • Centromere Protein A / metabolism*
  • Centromere Protein B / metabolism*
  • Chromosomal Proteins, Non-Histone / metabolism*
  • Chromosome Segregation* / genetics
  • Computational Biology
  • Epigenesis, Genetic
  • Gene Targeting
  • Humans
  • In Situ Hybridization, Fluorescence
  • Nucleosomes / genetics*
  • Nucleosomes / metabolism
  • RNA, Small Interfering

Substances

  • CENPB protein, human
  • Centromere Protein A
  • Centromere Protein B
  • Chromosomal Proteins, Non-Histone
  • Nucleosomes
  • RNA, Small Interfering
  • centromere protein C

Associated data

  • GEO/GSM3852804
  • GEO/GSE148187
  • GEO/GSM3852807
  • GEO/GSM3852808