Traditionally, composition and biomass of phytoplankton communities are determined by microscopy, but this method is time-consuming and so does not allow for high-frequency data acquisition across space and time. Pigment-based chemotaxonomy (CHEMTAX) is now widely applied to study of phytoplankton community structure on broader spatial and temporal scales of oceans, but the ability of this approach to provide estimates of phytoplankton assemblage in freshwater ecosystems is yet underdeveloped. To investigate the efficiency of the high-performance liquid chromatography (HPLC)-CHEMTAX in quantifying the different phytoplankton groups in inland freshwater, we present a comparison between phytoplankton pigment analyses by HPLC with CHEMTAX and microscopic counting of phytoplankton samples from four subtropical reservoirs in January and July 2014, respectively. The correlation between pigment and phytoplankton abundance detected by microscopy was stronger than that between pigment and phytoplankton biomass. The published marker pigments and their revised ratios can be used to describe phytoplankton abundances in a mixed community of freshwater phytoplankton, and pigment-based CHEMTAX can successfully describe the overall pattern of phytoplankton community dynamics during different seasons. The use of pigment-based CHEMTAX for quick surveys of phytoplankton communities can be recommended as a useful supplement or alternative tool to microscopy for freshwater ecosystem management.
Keywords: Algal pigments; Biomonitoring; CHEMTAX; Community ecology; Plankton.