Genotyping and plant-derived glycan utilization analysis of Bifidobacterium strains from mother-infant pairs

BMC Microbiol. 2020 Sep 10;20(1):277. doi: 10.1186/s12866-020-01962-w.

Abstract

Background: Bifidobacteria are important probiotics; some of the beneficial effects of bifidobacteria are achieved by the hydrolysis of glycans in the human gut. However, because the diet of breastfed infants typically lacks plant-derived glycans, in the gut environment of mothers and their breastfed infants, the mother will intake a variety of plant-derived glycans, such as from onions and bananas, through her diet. Under this assumption, we are interested in whether the same species of bifidobacteria isolated from mother-infant pairs present a distinction in their hydrolysis of plant-derived carbohydrates.

Results: Among the 36 Bifidobacterium strains, bifidobacterial carbohydrate utilization showed two trends related to the intestinal environment where the bacteria lived. Compared with infant-type bifidobacterial strains, adult-type bifidobacterial strains preferred to use plant-derived glycans. Of these strains, 10 isolates, 2 Bifidobacterium pseudocatenulatum (B. pseudocatenulatum), 2 Bifidobacterium pseudolongum (B. pseudolongum), 2 Bifidobacterium bifidum (B. bifidum), 2 Bifidobacterium breve (B. breve), and 2 Bifidobacterium longum (B. longum), were shared between the mother-infant pairs. Moreover, the repetitive sequence-based polymerase chain reaction (rep-PCR) results illustrated that B. pseudolongum and B. bifidum showed genotypic similarities of 95.3 and 98.2%, respectively. Combined with the carbohydrate fermentation study, these results indicated that the adult-type strains have a stronger ability to use plant-derived glycans than infant-type strains. Our work suggests that bifidobacterial carbohydrate metabolism differences resulted in the selective adaptation to the distinct intestinal environment of an adult or breastfed infant.

Conclusions: The present study revealed that the different gut environments can lead to the differences in the polysaccharide utilization in the same strains of bifidobacterial strains, suggesting a further goal of investigating the exact expression of certain enzymes in response to specific carbon sources.

Keywords: Bifidobacterium; Fingerprint; Genotype comparison; Glycan utilization.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Bifidobacterium / drug effects
  • Bifidobacterium / genetics*
  • Bifidobacterium / metabolism*
  • Breast Feeding
  • Carbohydrate Metabolism
  • Feces / microbiology
  • Gastrointestinal Microbiome* / genetics
  • Genotyping Techniques
  • Humans
  • Infant
  • Mothers*
  • Plants / chemistry
  • Polysaccharides / metabolism*
  • Polysaccharides / pharmacology
  • Species Specificity

Substances

  • Polysaccharides