The structure-based reaction mechanism of urease, a nickel dependent enzyme: tale of a long debate

J Biol Inorg Chem. 2020 Sep;25(6):829-845. doi: 10.1007/s00775-020-01808-w. Epub 2020 Aug 18.

Abstract

This review is an attempt to retrace the chronicle that starts from the discovery of the role of nickel as the essential metal ion in urease for the enzymatic catalysis of urea, a key step in the biogeochemical cycle of nitrogen on Earth, to the most recent progress in understanding the chemistry of this historical enzyme. Data and facts are presented through the magnifying lenses of the authors, using their best judgment to filter and elaborate on the many facets of the research carried out on this metalloenzyme over the years. The tale is divided in chapters that discuss and describe the results obtained in the subsequent leaps in the knowledge that led from the discovery of a biological role for Ni to the most recent advancements in the comprehension of the relationship between the structure and function of urease. This review is intended not only to focus on the bioinorganic chemistry of this beautiful metal-based catalysis, but also, and maybe primarily, to evoke inspiration and motivation to further explore the realm of bio-based coordination chemistry.

Keywords: Catalytic mechanism; Crystal structure; Helicobacter pylori; Klebsiella aerogenes; Nickel; Sporosarcina pasteurii; Urease.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism*
  • Binding Sites
  • Catalysis
  • Crystallography, X-Ray
  • Enterobacter aerogenes / enzymology
  • Helicobacter pylori / enzymology
  • Nickel / chemistry*
  • Protein Conformation
  • Signal Transduction
  • Sporosarcina / enzymology
  • Structure-Activity Relationship
  • Urease / chemistry*
  • Urease / metabolism*

Substances

  • Bacterial Proteins
  • Nickel
  • Urease

Supplementary concepts

  • Sporosarcina pasteurii