Multiomics Reveals Ectopic ATP Synthase Blockade Induces Cancer Cell Death via a lncRNA-mediated Phospho-signaling Network

Mol Cell Proteomics. 2020 Nov;19(11):1805-1825. doi: 10.1074/mcp.RA120.002219. Epub 2020 Aug 11.

Abstract

The EGFR tyrosine kinase inhibitor gefitinib is commonly used for lung cancer patients. However, some patients eventually become resistant to gefitinib and develop progressive disease. Here, we indicate that ecto-ATP synthase, which ectopically translocated from mitochondrial inner membrane to plasma membrane, is considered as a potential therapeutic target for drug-resistant cells. Quantitative multi-omics profiling reveals that ecto-ATP synthase inhibitor mediates CK2-dependent phosphorylation of DNA topoisomerase IIα (topo IIα) at serine 1106 and subsequently increases the expression of long noncoding RNA, GAS5. Additionally, we also determine that downstream of GAS5, p53 pathway, is activated by ecto-ATP synthase inhibitor for regulation of programed cell death. Interestingly, GAS5-proteins interactomic profiling elucidates that GAS5 associates with topo IIα and subsequently enhancing the phosphorylation level of topo IIα. Taken together, our findings suggest that ecto-ATP synthase blockade is an effective therapeutic strategy via regulation of CK2/phospho-topo IIα/GAS5 network in gefitinib-resistant lung cancer cells.

Keywords: Multiomics; RNA-binding proteomics; cancer therapeutics; drug resistance; ectopic ATP synthase; gefitinib resistance; lung cancer; micro arrays; phosphoproteome; phosphoproteomics; targeted therapies; transcriptional regulation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ATP Synthetase Complexes / antagonists & inhibitors*
  • ATP Synthetase Complexes / genetics
  • ATP Synthetase Complexes / metabolism
  • Antineoplastic Agents / pharmacology*
  • Apoptosis / drug effects
  • Apoptosis / genetics*
  • Carcinoma, Non-Small-Cell Lung / genetics
  • Carcinoma, Non-Small-Cell Lung / metabolism*
  • Casein Kinase II / metabolism
  • Cell Line, Tumor
  • Cell Membrane
  • Cell Proliferation / drug effects
  • Cell Proliferation / genetics
  • Cell Survival / drug effects
  • Cell Survival / genetics
  • DNA Topoisomerases, Type II / metabolism
  • Drug Resistance, Neoplasm / genetics*
  • Gefitinib / pharmacology
  • Gene Ontology
  • Humans
  • Immunohistochemistry
  • Lung Neoplasms / genetics
  • Lung Neoplasms / metabolism*
  • Oligonucleotide Array Sequence Analysis
  • Phosphorylation
  • Protein Kinase Inhibitors / pharmacology
  • Proteomics
  • RNA, Long Noncoding / genetics
  • RNA, Long Noncoding / metabolism*
  • RNA, Small Interfering
  • Signal Transduction / drug effects
  • Signal Transduction / genetics
  • Tandem Mass Spectrometry
  • Tumor Suppressor Protein p53 / genetics
  • Tumor Suppressor Protein p53 / metabolism

Substances

  • Antineoplastic Agents
  • GAS5 long non-coding RNA, human
  • Protein Kinase Inhibitors
  • RNA, Long Noncoding
  • RNA, Small Interfering
  • TP53 protein, human
  • Tumor Suppressor Protein p53
  • Casein Kinase II
  • ATP Synthetase Complexes
  • DNA Topoisomerases, Type II
  • Gefitinib