Mutation-Simulator: fine-grained simulation of random mutations in any genome

M A Kühl; B Stich; D C Ries

doi:10.1093/bioinformatics/btaa716

Mutation-Simulator: fine-grained simulation of random mutations in any genome

Bioinformatics. 2021 May 1;37(4):568-569. doi: 10.1093/bioinformatics/btaa716.

Authors

M A Kühl¹, B Stich¹, D C Ries¹

Affiliation

¹ Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf 40225, Germany.

Abstract

Summary: Mutation-Simulator allows the introduction of various types of sequence alterations in reference sequences, with reasonable compute-time even for large eukaryotic genomes. Its intuitive system for fine-grained control over mutation rates along the sequence enables the mimicking of natural mutation patterns. Using standard file formats for input and output data, it can easily be integrated into any development and benchmarking workflow for high-throughput sequencing applications.

Availability and implementation: Mutation-Simulator is written in Python 3 and the source code, documentation, help and use cases are available on the Github page at https://github.com/mkpython3/Mutation-Simulator. It is free for use under the GPL 3 license.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Computer Simulation
Genome*
High-Throughput Nucleotide Sequencing
Mutation
Software*