Intestinirhabdus alba gen. nov., sp. nov., a novel genus of the family Enterobacteriaceae, isolated from the gut of plastic-eating larvae of the Coleoptera insect Zophobas atratus

Int J Syst Evol Microbiol. 2020 Sep;70(9):4951-4959. doi: 10.1099/ijsem.0.004364.

Abstract

A bacterial strain, BIT-B35T, was isolated from the gut of plastic-eating larvae of the Coleoptera insect Zophobas atratus. Its taxonomic position was determined by using a polyphasic approach. Cells were white-pigmented, Gram-stain-negative, motile short rods with terminal flagella. The 16S rRNA gene sequence (1411 bp) of strain BIT-B35T showed highest similarity (98.1%) to Escherichia fergusonii ATCC 35469T and Citrobacter koseri LMG 5519T. The results of phylogenetic analyses, based on the 16S rRNA gene, concatenated sequences of seven housekeeping genes (atpD, gyrB, infB, rpoB, pyrG, fusA and leuS) and genome sequences, placed strain BIT-B35T in a separate lineage among the family of Enterobacteriaceae. The major fatty acids were C16 : 0, C17 : 0 cyclo and C19 : 0 cyclo ω8c. The genomic DNA G+C content of strain BIT-B35T was 57.1 mol%. The chemotaxonomic data plus results of physiological and biochemical tests also distinguished strain BIT-B35T from members of other genera within the family Enterobacteriaceae. Therefore, strain BIT-B35T is considered to represent a novel species of a novel genus within the family Enterobacteriaceae, for which the name Intestinirhabdus alba gen. nov., sp. nov. is proposed. The type strain is BIT-B35T (=CGMCC 1.17042T=KCTC 72448T).

Keywords: Intestinirhabdus; Zophobas; gut bacteria; plastic biodegradation; polystyrene.

MeSH terms

  • Animals
  • Bacterial Typing Techniques
  • Base Composition
  • China
  • Coleoptera / microbiology*
  • DNA, Bacterial / genetics
  • Enterobacteriaceae / classification*
  • Enterobacteriaceae / isolation & purification
  • Fatty Acids / chemistry
  • Gastrointestinal Microbiome*
  • Genes, Bacterial
  • Larva / microbiology
  • Phylogeny*
  • Plastics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Plastics
  • RNA, Ribosomal, 16S