Structural analysis of a novel substrate-free form of the aminoglycoside 6'-N-acetyltransferase from Enterococcus faecium

Acta Crystallogr F Struct Biol Commun. 2020 Aug 1;76(Pt 8):364-371. doi: 10.1107/S2053230X20009735. Epub 2020 Jul 28.

Abstract

Aminoglycoside acetyltransferases (AACs) catalyze the transfer of an acetyl group between acetyl-CoA and an aminoglycoside, producing CoA and an acetylated aminoglycoside. AAC(6')-Ii enzymes target the amino group linked to the 6' C atom in an aminoglycoside. Several structures of the AAC(6')-Ii from Enterococcus faecium [Ef-AAC(6')-Ii] have been reported to date. However, the detailed mechanism of its enzymatic function remains elusive. In this study, the crystal structure of Ef-AAC(6')-Ii was determined in a novel substrate-free form. Based on structural analysis, it is proposed that Ef-AAC(6')-Ii sequentially undergoes conformational selection and induced fit for substrate binding. These results therefore provide a novel viewpoint on the mechanism of action of Ef-AAC(6')-Ii.

Keywords: Enterococcus faecium; acetyl-CoA; aminoglycoside acetyltransferases; conformational selection; induced fit.

MeSH terms

  • Acetyl Coenzyme A / chemistry*
  • Acetyl Coenzyme A / metabolism
  • Acetylation
  • Acetyltransferases / chemistry*
  • Acetyltransferases / genetics
  • Acetyltransferases / metabolism
  • Amino Acid Motifs
  • Aminoglycosides / chemistry*
  • Aminoglycosides / metabolism
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Cloning, Molecular
  • Crystallography, X-Ray
  • Enterococcus faecium / chemistry*
  • Enterococcus faecium / enzymology
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Genetic Vectors / chemistry
  • Genetic Vectors / metabolism
  • Models, Molecular
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Substrate Specificity

Substances

  • Aminoglycosides
  • Bacterial Proteins
  • Recombinant Proteins
  • Acetyl Coenzyme A
  • Acetyltransferases
  • aminoglycoside N(6')-acetyltransferase