NADP modulates RNA m6A methylation and adipogenesis via enhancing FTO activity

Nat Chem Biol. 2020 Dec;16(12):1394-1402. doi: 10.1038/s41589-020-0601-2. Epub 2020 Jul 27.

Abstract

Metabolism is often regulated by the transcription and translation of RNA. In turn, it is likely that some metabolites regulate enzymes controlling reversible RNA modification, such as N6-methyladenosine (m6A), to modulate RNA. This hypothesis is at least partially supported by the findings that multiple metabolic diseases are highly associated with fat mass and obesity-associated protein (FTO), an m6A demethylase. However, knowledge about whether and which metabolites directly regulate m6A remains elusive. Here, we show that NADP directly binds FTO, independently increases FTO activity, and promotes RNA m6A demethylation and adipogenesis. We screened a set of metabolites using a fluorescence quenching assay and NADP was identified to remarkably bind FTO. In vitro demethylation assays indicated that NADP enhances FTO activity. Furthermore, NADP regulated mRNA m6A via FTO in vivo, and deletion of FTO blocked NADP-enhanced adipogenesis in 3T3-L1 preadipocytes. These results build a direct link between metabolism and RNA m6A demethylation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3T3-L1 Cells
  • Adenosine / analogs & derivatives*
  • Adenosine / metabolism
  • Adipocytes / cytology
  • Adipocytes / drug effects*
  • Adipocytes / enzymology
  • Adipogenesis / drug effects*
  • Adipogenesis / genetics
  • AlkB Homolog 5, RNA Demethylase / antagonists & inhibitors
  • AlkB Homolog 5, RNA Demethylase / genetics
  • AlkB Homolog 5, RNA Demethylase / metabolism
  • Alpha-Ketoglutarate-Dependent Dioxygenase FTO / genetics*
  • Alpha-Ketoglutarate-Dependent Dioxygenase FTO / metabolism
  • Animals
  • Binding Sites
  • Cell Differentiation / drug effects
  • Demethylation
  • Enzyme Assays
  • Gene Deletion
  • Gene Expression Regulation
  • HEK293 Cells
  • High-Throughput Screening Assays
  • Humans
  • Kinetics
  • Methyltransferases / antagonists & inhibitors
  • Methyltransferases / genetics
  • Methyltransferases / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Models, Molecular
  • NADP / metabolism
  • NADP / pharmacology*
  • Protein Binding
  • Protein Structure, Secondary
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • RNA, Small Interfering / genetics
  • RNA, Small Interfering / metabolism

Substances

  • RNA, Messenger
  • RNA, Small Interfering
  • NADP
  • N-methyladenosine
  • ALKBH5 protein, mouse
  • AlkB Homolog 5, RNA Demethylase
  • FTO protein, mouse
  • Alpha-Ketoglutarate-Dependent Dioxygenase FTO
  • Methyltransferases
  • Mettl3 protein, mouse
  • Adenosine