Comparative genomic insights into Yersinia hibernica - a commonly misidentified Yersinia enterocolitica-like organism

Microb Genom. 2020 Sep;6(9):mgen000411. doi: 10.1099/mgen.0.000411. Epub 2020 Jul 23.

Abstract

Food-associated outbreaks linked to enteropathogenic Yersinia enterocolitica are of concern to public health. Pigs and their meat are recognized risk factors for transmission of Y. enterocolitica. This study aimed to describe the comparative genomics of Y. enterocolitica along with a number of misclassified Yersinia isolates, now constituting the recently described Yersinia hibernica. The latter was originally cultured from an environmental sample taken at a pig slaughterhouse. Unique features were identified in the genome of Y. hibernica, including a novel integrative conjugative element (ICE), denoted as ICEYh-1 contained within a 255 kbp region of plasticity. In addition, a zebrafish embryo infection model was adapted and applied to assess the virulence potential among Yersinia isolates including Y. hibernica.

Keywords: Yersinia enterocolitica; Yersinia hibernica; comparative genomics; zebrafish embryo.

MeSH terms

  • Animals
  • Conjugation, Genetic
  • Diagnosis, Differential
  • Disease Models, Animal
  • Embryo, Nonmammalian / microbiology*
  • Food Microbiology
  • Genomics / methods*
  • Phylogeny
  • Swine
  • Virulence Factors / genetics
  • Yersinia / classification*
  • Yersinia / genetics
  • Yersinia / isolation & purification
  • Yersinia / pathogenicity
  • Yersinia Infections / diagnosis*
  • Yersinia enterocolitica / classification*
  • Yersinia enterocolitica / genetics
  • Yersinia enterocolitica / isolation & purification
  • Yersinia enterocolitica / pathogenicity
  • Zebrafish

Substances

  • Virulence Factors

Supplementary concepts

  • Yersinia hibernica