Cryo-EM structures of HKU2 and SADS-CoV spike glycoproteins provide insights into coronavirus evolution

Nat Commun. 2020 Jun 17;11(1):3070. doi: 10.1038/s41467-020-16876-4.

Abstract

Porcine coronavirus SADS-CoV has been identified from suckling piglets with severe diarrhea in southern China in 2017. The SADS-CoV genome shares ~95% identity to that of bat α-coronavirus HKU2, suggesting that SADS-CoV may have emerged from a natural reservoir in bats. Here we report the cryo-EM structures of HKU2 and SADS-CoV spike (S) glycoprotein trimers at 2.38 Å and 2.83 Å resolution, respectively. We systematically compare the domains of HKU2 spike with those of α-, β-, γ-, and δ-coronavirus spikes, showing that the S1 subunit N- and C-terminal domains of HKU2/SADS-CoV are ancestral domains in the evolution of coronavirus spike proteins. The connecting region after the fusion peptide in the S2 subunit of HKU2/SADS-CoV adopts a unique conformation. These results structurally demonstrate a close evolutionary relationship between HKU2/SADS-CoV and β-coronavirus spikes and provide insights into the evolution and cross-species transmission of coronaviruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alphacoronavirus / chemistry*
  • Animals
  • Cell Line
  • Chiroptera
  • Coronavirus Infections
  • Cryoelectron Microscopy
  • Evolution, Molecular
  • Glycoproteins / ultrastructure
  • Humans
  • Models, Molecular
  • Protein Domains
  • Spike Glycoprotein, Coronavirus / ultrastructure*
  • Swine

Substances

  • Glycoproteins
  • Spike Glycoprotein, Coronavirus

Supplementary concepts

  • Swine acute diarrhea syndrome coronavirus