Rapid screening of marine bacterial symbionts using MALDI-TOF MS

Arch Microbiol. 2020 Oct;202(8):2329-2336. doi: 10.1007/s00203-020-01917-9. Epub 2020 Jun 11.

Abstract

Matrix-Assisted Laser Desorption Ionization Time-Of-Flight Mass Spectrometry (MALDI-TOF MS) is a rapid, cost-effective and high-throughput method for bacteria characterization. However, most previous studies focused on clinical isolates. In this study, we evaluated the use of MALDI-TOF MS as a rapid screening tool for marine bacterial symbionts. A set of 255 isolates from different marine sources (corals, sponge, fish and seawater) was analyzed using cell lysates to obtain a rapid grouping. Cluster analysis of mass spectra and 16S rRNA showed 18 groups, including Vibrio, Bacillus, Pseudovibrio, Alteromonas and Ruegeria. MALDI-TOF distance similarity scores ≥ 60% and ≥ 70% correspond to ≥ 98.7% 16S rRNA gene sequence similarity and ≥ 95% pyrH gene sequence similarity, respectively. MALDI-TOF MS is a useful tool for Vibrio species groups' identification.

Keywords: MALDI-TOF; Marine bacterial symbionts; Screening tool; Vibrio; pyrH gene.

MeSH terms

  • Environmental Microbiology*
  • Marine Biology / methods*
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology*
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization*
  • Symbiosis
  • Vibrio / chemistry
  • Vibrio / classification*
  • Vibrio / genetics

Substances

  • RNA, Ribosomal, 16S