Improvement strategies for successful next-generation sequencing analysis of lung cancer

Future Oncol. 2020 Aug;16(22):1597-1606. doi: 10.2217/fon-2020-0332. Epub 2020 Jun 3.

Abstract

Aim: We aimed to improve the success rate of NGS (next-generation sequencing) analysis through improved strategies of lung cancer sampling. Materials & methods: The improvement strategies are as follows. Surgically resected specimens were preferentially submitted in cooperation with pathologists and surgeons. In bronchoscopic samples, the size of the sample collection device and the number of samples collected was increased. Results: The strategies increased the success rate of NGS analysis of DNA from 69.3 to 91.1%, and that of RNA from 64.6 to 90.0%. Discussion: The introduction of strategies aimed at improving the success of NGS analysis resulted in an improvement in the success rate and brought us closer to the delivery of effective precision medicine in cancer therapy.

Keywords: lung cancer; next-generation sequence; precision medicine; sampling; success rate.

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • DNA / analysis
  • Female
  • High-Throughput Nucleotide Sequencing / methods*
  • Humans
  • Lung Neoplasms / genetics*
  • Male
  • Middle Aged
  • Precision Medicine
  • Prospective Studies

Substances

  • DNA