Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia

Rohaya Ibrahim; Noor Wahida Ismail-Suhaimy; Tan Shu-Qing; Siti Izera Ismail; Md Yasin Ina-Salwany; Mohd Termizi Yusof; Mansor Hakiman; Daljit Singh Karam; Dzarifah Zulperi

doi:10.1016/j.dib.2020.105634

Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia

Data Brief. 2020 Apr 30:30:105634. doi: 10.1016/j.dib.2020.105634. eCollection 2020 Jun.

Authors

Rohaya Ibrahim¹, Noor Wahida Ismail-Suhaimy¹, Tan Shu-Qing¹, Siti Izera Ismail¹, Md Yasin Ina-Salwany², Mohd Termizi Yusof³, Mansor Hakiman⁴, Daljit Singh Karam⁵, Dzarifah Zulperi^{1

6}

Affiliations

¹ Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
² Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
³ Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
⁴ Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
⁵ Department of Land Management, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
⁶ Laboratory of Sustainable Resources Management, Institute of Tropical Forestry and Forest Products, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.

Abstract

A Gram-negative bacterium, Pantoea stewartii subspecies stewartii (P. stewartii subsp. stewartii) has been recognized as the causative agent for jackfruit bronzing disease in Malaysia. Here, we report the whole genome sequencing dataset of P. stewartii subsp. stewartii strain SQT1 isolated from local infected jackfruit. The paired-end libraries with an insert size of 350 bp was subjected to the Illumina Hiseq 4000, generating a genome size of 4,783,993 bp with a G+C content of 53.7%. A total protein of 4,671 was identified including virulence factors, resistance factors and secretion systems. Pantoea stewartii subsp. stewartii strain DC283 (NCBI accession no. CP017581.1) was used as a reference genome, where the query hit 72% coverage and average sequencing depth of 68. In total, 28,717 nucleotide polymorphisms, 520 small insertion/deletions and 142 structure variants were identified. The complete genome was deposited at the European Nucleotide Archive under the sample accession number ERP119356 and study accession number PRJEB36196.

Keywords: Illumina Hiseq; Malaysia; Pantoea stewartii subspecies stewartii; T6SS; bronzing disease; genome sequencing; jackfruit; virulence factors.