Molecular function predictions and diagnostic value analysis of plasma exosomal miRNAs in Hirschsprung's disease

Epigenomics. 2020 Mar;12(5):409-422. doi: 10.2217/epi-2019-0190. Epub 2020 Apr 16.

Abstract

Aim: To discover the potential roles of plasma exosomal miRNAs in Hirschsprung's disease (HSCR) and identify potential noninvasive biomarkers for early diagnosis of HSCR. Materials & methods: Plasma samples were collected from HSCR patients and matched controls. Exosomes were isolated before high-throughput Illumina sequencing was utilized to gain a profile of dysregulated exosomal miRNAs, followed with further verification in two separate cohorts. Bioinformatics analyses were also adopted to explore the molecular functions of dysregulated miRNAs in Hirschsprung's disease. Results & conclusion: 31 dysregulated miRNAs were identified with five considered as promising HSCR signatures. Gene enrichment analysis disclosed that the upregulated miRNAs were most likely to participate in 'extracellular matrix-receptor interaction' and contribute to HSCR through interfering in cell junctions.

Keywords: ECM; Hirschsprung’s disease; KEGG; biomarker; gene enrichment; miRNA; plasma exosomes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers*
  • Circulating MicroRNA*
  • Computational Biology / methods
  • Exosomes* / genetics
  • Gene Expression Profiling
  • Gene Expression Regulation
  • High-Throughput Nucleotide Sequencing
  • Hirschsprung Disease / blood
  • Hirschsprung Disease / diagnosis*
  • Hirschsprung Disease / genetics*
  • Humans
  • Liquid Biopsy / methods
  • MicroRNAs / blood
  • MicroRNAs / genetics*
  • Prognosis
  • RNA Interference

Substances

  • Biomarkers
  • Circulating MicroRNA
  • MicroRNAs