Theoretical identification of thermostabilizing amino acid mutations for G-protein-coupled receptors

Biophys Rev. 2020 Apr;12(2):323-332. doi: 10.1007/s12551-020-00678-5. Epub 2020 Apr 8.

Abstract

Thermostabilization of a membrane proteins, especially G-protein-coupled receptors (GPCRs), is often necessary for biochemical applications and pharmaceutical studies involving structure-based drug design. Here we review our theoretical, physics-based method for identifying thermostabilizing amino acid mutations. Its novel aspects are the following: The entropic effect originating from the translational displacement of hydrocarbon groups within the lipid bilayer is treated as a pivotal factor; a reliable measure of thermostability is introduced and a mutation which enlarges the measure to a significant extent is chosen; and all the possible mutations can be examined with moderate computational effort. It was shown that mutating the residue at a position of NBW = 3.39 (NBW is the Ballesteros-Weinstein number) to Arg or Lys leads to the stabilization of significantly many different GPCRs of class A in the inactive state. Up to now, we have been successful in stabilizing several GPCRs and newly solving three-dimensional structures for the muscarinic acetylcholine receptor 2 (M2R), prostaglandin E receptor 4 (EP4), and serotonin 2A receptor (5-HT2AR) using X-ray crystallography. The subjects to be pursued in future studies are also discussed.

Keywords: G-protein-coupled receptor; Integral equation theory; Lipid bilayer; Membrane protein; Morphometric approach; Protein folding; Solvation thermodynamics; Thermostabilizing mutation.

Publication types

  • Review