Diazabicyclooctane Functionalization for Inhibition of β-Lactamases from Enterobacteria

J Med Chem. 2020 May 28;63(10):5257-5273. doi: 10.1021/acs.jmedchem.9b02125. Epub 2020 May 14.

Abstract

Second-generation β-lactamase inhibitors containing a diazabicyclooctane (DBO) scaffold restore the activity of β-lactams against pathogenic bacteria, including those producing class A, C, and D enzymes that are not susceptible to first-generation inhibitors containing a β-lactam ring. Here, we report optimization of a synthetic route to access triazole-containing DBOs and biological evaluation of a series of 17 compounds for inhibition of five β-lactamases representative of enzymes found in pathogenic Gram-negative bacteria. A strong correlation (Spearman coefficient of 0.87; p = 4.7 × 10-21) was observed between the inhibition efficacy of purified β-lactamases and the potentiation of β-lactam antibacterial activity, indicating that DBO functionalization did not impair penetration. In comparison to reference DBOs, avibactam and relebactam, our compounds displayed reduced efficacy, likely due to the absence of hydrogen bonding with a conserved asparagine residue at position 132. This was partially compensated for by additional interactions involving certain triazole substituents.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / pharmacology*
  • Aza Compounds / chemistry
  • Aza Compounds / pharmacology*
  • Cyclooctanes / chemistry
  • Cyclooctanes / pharmacology*
  • Enterobacteriaceae / drug effects*
  • Enterobacteriaceae / metabolism*
  • Gram-Negative Bacteria / drug effects
  • Gram-Negative Bacteria / metabolism
  • Microbial Sensitivity Tests / methods
  • beta-Lactamase Inhibitors / chemistry
  • beta-Lactamase Inhibitors / pharmacology*
  • beta-Lactamases / isolation & purification
  • beta-Lactamases / metabolism*

Substances

  • Anti-Bacterial Agents
  • Aza Compounds
  • Cyclooctanes
  • beta-Lactamase Inhibitors
  • diazabicyclo(2.2.2)octane
  • beta-Lactamases