Phylogenetic evaluation of the genus Nostoc and description of Nostoc neudorfense sp. nov., from the Czech Republic

Int J Syst Evol Microbiol. 2020 Apr;70(4):2740-2749. doi: 10.1099/ijsem.0.004102. Epub 2020 Mar 27.

Abstract

Cyanobacterial strain ARC8 was isolated from seepage coming into the river Dračice, Františkov, Czech Republic, and was characterized using a polyphasic approach. Strain ARC8 showed a typical Nostoc-like morphology and in-depth morphological characterization indicated that it is a member of the genus Nostoc. Furthermore, in the 16S rRNA gene phylogeny inferred using Bayesian inference, maximum likelihood and neighbour joining methods, strain ARC8 clustered within the Nostoc sensu stricto clade. The phylogenetic distance and the positioning of strain ARC8 also indicated that it is a member of the genus Nostoc. Furthermore, the rbcL gene phylogeny along with the 16S-23S ITS secondary structure analysis also supported the findings from the 16S rRNA gene tree. In accordance with the International Code of Nomenclature for Algae, Fungi and Plants we describe a novel species of Nostoc with the name Nostoc neudorfense sp. nov.

Keywords: 16S rRNA gene; Czech Republic; ITS; cyanobacteria; polyphasic approach; taxonomy.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Bayes Theorem
  • Czech Republic
  • DNA, Bacterial / genetics
  • Nostoc / classification*
  • Nostoc / isolation & purification
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Rivers / microbiology*
  • Sequence Analysis, DNA

Substances

  • DNA, Bacterial
  • RNA, Ribosomal, 16S