Visualizing the protons in a metalloenzyme electron proton transfer pathway

Proc Natl Acad Sci U S A. 2020 Mar 24;117(12):6484-6490. doi: 10.1073/pnas.1918936117. Epub 2020 Mar 9.

Abstract

In redox metalloenzymes, the process of electron transfer often involves the concerted movement of a proton. These processes are referred to as proton-coupled electron transfer, and they underpin a wide variety of biological processes, including respiration, energy conversion, photosynthesis, and metalloenzyme catalysis. The mechanisms of proton delivery are incompletely understood, in part due to an absence of information on exact proton locations and hydrogen bonding structures in a bona fide metalloenzyme proton pathway. Here, we present a 2.1-Å neutron crystal structure of the complex formed between a redox metalloenzyme (ascorbate peroxidase) and its reducing substrate (ascorbate). In the neutron structure of the complex, the protonation states of the electron/proton donor (ascorbate) and all of the residues involved in the electron/proton transfer pathway are directly observed. This information sheds light on possible proton movements during heme-catalyzed oxygen activation, as well as on ascorbate oxidation.

Keywords: ascorbate; heme; neutron; peroxidase; proton transfer.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ascorbate Peroxidases / chemistry
  • Ascorbate Peroxidases / metabolism
  • Ascorbic Acid / chemistry
  • Ascorbic Acid / metabolism
  • Catalysis
  • Electrons*
  • Heme / chemistry
  • Hydrogen Bonding
  • Metalloproteins / chemistry*
  • Metalloproteins / metabolism
  • Models, Molecular
  • Neutron Diffraction
  • Oxidation-Reduction
  • Protons*

Substances

  • Metalloproteins
  • Protons
  • Heme
  • Ascorbate Peroxidases
  • Ascorbic Acid

Associated data

  • PDB/6XV4
  • PDB/6TAE