Transcriptomic data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S treated with novobiocin

Natalia E Gogoleva; Tatiana A Konnova; Alexander S Balkin; Andrey O Plotnikov; Yuri V Gogolev

doi:10.1016/j.dib.2020.105297

Transcriptomic data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S treated with novobiocin

Data Brief. 2020 Feb 17:29:105297. doi: 10.1016/j.dib.2020.105297. eCollection 2020 Apr.

Authors

Natalia E Gogoleva^{1

2}, Tatiana A Konnova¹, Alexander S Balkin³, Andrey O Plotnikov³, Yuri V Gogolev^{1

2}

Affiliations

¹ Kazan Institute of Biochemistry and Biophysics, Kazan Scientific Center of RAS, 2/31 Lobachevsky St., Kazan 420111, Russian Federation.
² Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 18 Lenina St., Kazan 420021, Russian Federation.
³ Center of Shared Scientific Equipment "Persistence of Microorganisms", Institute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, Orenburg, Russian Federation.

Abstract

In enteric bacteria, DNA supercoiling is highly responsive to environmental conditions. Host specific features of environment serve as cues for the expression of genes required for colonization of host niches via changing supercoiling [1]. It has been shown that substitution at position 87 of GyrA of Salmonella enterica str. SL1344 influences global supercoiling and results in an altered transcriptome with increased expression of stress response pathways [2]. Aminocoumarin antibiotics, such as novobiocin, can be used to relax supercoiling and alter the expression of supercoiling-sensitive genes. Meanwhile, Salmonella enterica demonstrates a significant resistance to this antibiotic and relatively small variability of supercoiling in response to the growth phase, osmotic pressure, and novobiocin treatment. Here we present for the first time transcriptome data of Salmonella enterica subsp. Enterica serovar Typhimurium str. 14028S grown in the presence of novobiocin. These data will help identify genes involved in novobiocin resistance and adaptation processes associated with torsion perturbations in S. enterica. Cleaned FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA, Identifier: SRP239815) and have been assigned BioProject accession PRJNA599397.

Keywords: Illumina; Novobiocin treatment; RNA-seq; Salmonella enterica.