Nanopore Sequencing in Blood Diseases: A Wide Range of Opportunities

Front Genet. 2020 Feb 19:11:76. doi: 10.3389/fgene.2020.00076. eCollection 2020.

Abstract

The molecular pathogenesis of hematological diseases is often driven by genetic and epigenetic alterations. Next-generation sequencing has considerably increased our genomic knowledge of these disorders becoming ever more widespread in clinical practice. In 2012 Oxford Nanopore Technologies (ONT) released the MinION, the first long-read nanopore-based sequencer, overcoming the main limits of short-reads sequences generation. In the last years, several nanopore sequencing approaches have been performed in various "-omic" sciences; this review focuses on the challenge to introduce ONT devices in the hematological field, showing advantages, disadvantages and future perspectives of this technology in the precision medicine era.

Keywords: blood diseases; epigenetic modifications; nanopore sequencing; structural variants; target gene sequencing; transcriptome.

Publication types

  • Review