Microsatellite primer development in elasmobranchs using next generation sequencing of enriched libraries

Mol Biol Rep. 2020 Apr;47(4):2669-2675. doi: 10.1007/s11033-020-05357-y. Epub 2020 Mar 4.

Abstract

Microsatellites are useful in studies of population genetics, sibship, and parentage. Here, we screened for microsatellites from multiple elasmobranch genomic libraries using an enrichment protocol followed by sequencing on an Illumina platform. We concurrently screened five and then nine genomes and describe the number of potential loci from each respective round of sequencing. To validate the efficacy of the protocol, we developed and tested primers for the pelagic thresher shark, Alopias pelagicus. The method described here is a cost-effective protocol to increase the pool of potential useful loci and allows the concurrent screening of multiple libraries.

Keywords: Elasmobranchs; Microsatellites; Pelagic thresher shark.

MeSH terms

  • Animals
  • Elasmobranchii / genetics*
  • Gene Library
  • Genetics, Population / methods
  • High-Throughput Nucleotide Sequencing / methods*
  • Microsatellite Repeats / genetics*
  • Sharks / genetics