New approach for membrane protein reconstitution into peptidiscs and basis for their adaptability to different proteins

Elife. 2020 Mar 3:9:e53530. doi: 10.7554/eLife.53530.

Abstract

Previously we introduced peptidiscs as an alternative to detergents to stabilize membrane proteins in solution (Carlson et al., 2018). Here, we present 'on-gradient' reconstitution, a new gentle approach for the reconstitution of labile membrane-protein complexes, and used it to reconstitute Rhodobacter sphaeroides reaction center complexes, demonstrating that peptidiscs can adapt to transmembrane domains of very different sizes and shapes. Using the conventional 'on-bead' approach, we reconstituted Escherichia coli proteins MsbA and MscS and find that peptidiscs stabilize them in their native conformation and allow for high-resolution structure determination by cryo-electron microscopy. The structures reveal that peptidisc peptides can arrange around transmembrane proteins differently, thus revealing the structural basis for why peptidiscs can stabilize such a large variety of membrane proteins. Together, our results establish the gentle and easy-to-use peptidiscs as a potentially universal alternative to detergents as a means to stabilize membrane proteins in solution for structural and functional studies.

Keywords: Cryo-electron microscopy; E. coli; Peptidiscs; biochemistry; chemical biology; membrane mimetics; molecular biophysics; nanodiscs; structural biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Cell Membrane / chemistry*
  • Cryoelectron Microscopy
  • Gene Expression Regulation, Bacterial
  • Image Processing, Computer-Assisted
  • Membrane Proteins / chemistry*
  • Membrane Proteins / classification
  • Nanostructures*
  • Protein Conformation
  • Rhodobacter sphaeroides / metabolism

Substances

  • Bacterial Proteins
  • Membrane Proteins

Associated data

  • PDB/6UZH
  • PDB/6UZ2
  • PDB/6UZL