DNA methylation-mediated Siglec-7 regulation in natural killer cells via two 5' promoter CpG sites

Immunology. 2020 May;160(1):38-51. doi: 10.1111/imm.13179. Epub 2020 Mar 5.

Abstract

First discovered on the natural killer (NK) cell, the cell surface inhibitory receptor sialic acid-binding immunoglobulin-like lectin-7 (Siglec-7) is known for regulating many important biological activities. However, the detail regulatory mechanism for Siglec-7 expression in NK cells currently remains unclear. In this study, we aimed to investigate how cell surface Siglec-7 expression is regulated and found that, in both NK cell lines and peripheral NK cells, transcription was the main regulatory step. Furthermore, when NK-92MI and peripheral NK cells were treated with DNA methyltransferase (DNMT) inhibitor, the CpG island, with 9 CpG sites, in 5' Siglec-7 promoter became noticeably hypomethylated, and Siglec-7 expression increased in both RNA transcript and surface protein. Within this CpG island, we identified both CpG 8 and CpG 9 as two key regulators responsible for Siglec-7 expression. Additionally, by using histone deacetylases (HDAC) inhibitor, butyric acid, we showed that Siglec-7 expression was also subjected to the histone modification. And a combined treatment with both 5-azacytidine and butyric acid showed an additive effect on Siglec-7 transcript expression in peripheral NK cells.

Keywords: DNA methylation; Siglec-7; epigenetics; histone acetylation; natural killer cell.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigens, Differentiation, Myelomonocytic / genetics*
  • Antigens, Differentiation, Myelomonocytic / metabolism
  • Azacitidine / pharmacology
  • Butyric Acid / pharmacology
  • Cell Line
  • CpG Islands / genetics
  • DNA Methylation / drug effects
  • DNA Methylation / immunology
  • Epigenesis, Genetic / drug effects
  • Epigenesis, Genetic / immunology*
  • Histone Code / drug effects
  • Histone Deacetylase Inhibitors / pharmacology
  • Histone Deacetylases / metabolism
  • Humans
  • Killer Cells, Natural / drug effects
  • Killer Cells, Natural / immunology*
  • Killer Cells, Natural / metabolism
  • Lectins / genetics*
  • Lectins / metabolism
  • Promoter Regions, Genetic / genetics
  • RNA-Seq
  • Transcription, Genetic / drug effects
  • Transcription, Genetic / immunology

Substances

  • Antigens, Differentiation, Myelomonocytic
  • Histone Deacetylase Inhibitors
  • Lectins
  • SIGLEC7 protein, human
  • Butyric Acid
  • Histone Deacetylases
  • Azacitidine