Rapid Nanopore Whole-Genome Sequencing for Anthrax Emergency Preparedness

Emerg Infect Dis. 2020 Feb;26(2):358-361. doi: 10.3201/eid2602.191351.

Abstract

Human anthrax cases necessitate rapid response. We completed Bacillus anthracis nanopore whole-genome sequencing in our high-containment laboratory from a human anthrax isolate hours after receipt. The de novo assembled genome showed no evidence of known antimicrobial resistance genes or introduced plasmid(s). Same-day genomic characterization enhances public health emergency response.

Keywords: Bacillus anthracis; anthrax; bacteria; bioterrorism and preparedness; emergency preparedness; nanopore; whole-genome sequencing; zoonoses.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Anthrax / prevention & control*
  • Bacillus anthracis / genetics
  • Bacillus anthracis / isolation & purification*
  • Bioterrorism
  • Civil Defense
  • Genome, Bacterial
  • Humans
  • Public Health
  • Real-Time Polymerase Chain Reaction
  • United States
  • Whole Genome Sequencing