Holistic process development to mitigate proteolysis of a subunit rotavirus vaccine candidate produced in Pichia pastoris by means of an acid pH pulse during fed-batch fermentation

Biotechnol Prog. 2020 May;36(3):e2966. doi: 10.1002/btpr.2966. Epub 2020 Feb 3.

Abstract

To meet the challenges of global health, vaccine design and development must be reconsidered to achieve cost of goods as low as 15¢ per dose. A new recombinant protein-based rotavirus vaccine candidate derived from non-replicative viral subunits fused to a P2 tetanus toxoid CD4(+) T cell epitope is currently under clinical development. We have sought to simplify the existing manufacturing process to meet these aims. To this end, we have taken a holistic process development approach to reduce process complexity and costs while producing a product with the required characteristics. We have changed expression system from Escherichia coli to Pichia pastoris, to produce a secreted product, thereby reducing the number of purification steps. However, the presence of proteases poses challenges to product quality. To understand the effect of fermentation parameters on product quality small-scale fermentations were carried out. Media pH and fermentation duration had the greatest impact on the proportion of full-length product. A novel acidic pH pulse strategy was used to minimize proteolysis, and this combined with an early harvest time significantly increased the proportion of full-length material (60-75%). An improved downstream process using a combination of CIEX and AIEX to further reduce proteases, resulted in maintaining product quality (95% yield).

Keywords: Pichia pastoris; fed-batch fermentation; ion exchange chromatography; proteolysis; vaccine development.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Batch Cell Culture Techniques*
  • Fermentation / drug effects
  • Humans
  • Hydrogen-Ion Concentration
  • Proteolysis
  • Rotavirus / pathogenicity
  • Rotavirus Infections / prevention & control*
  • Rotavirus Infections / virology
  • Rotavirus Vaccines / biosynthesis*
  • Rotavirus Vaccines / chemistry
  • Rotavirus Vaccines / genetics
  • Saccharomycetales / chemistry
  • Saccharomycetales / genetics*

Substances

  • Rotavirus Vaccines

Supplementary concepts

  • Komagataella pastoris