Mucosal microbial load in Crohn's disease: A potential predictor of response to faecal microbiota transplantation

EBioMedicine. 2020 Jan:51:102611. doi: 10.1016/j.ebiom.2019.102611. Epub 2020 Jan 2.

Abstract

Background: The remission of Crohn's disease (CD) can be accomplished by faecal microbiota transplantation (FMT). However, this procedure has a low success rate, which could be attributed to mis-communication between recipient intestinal mucosa and donor microbiota.

Methods: Here we used a human explant tissue model and an in vivo mouse model to examine changes in recipient intestinal mucosa upon contact with a faecal suspension (FS) obtained from a healthy donor. CD patients provided resected inflamed and non-inflamed mucosal tissues, whereas control colonic mucosa samples were collected from colorectal cancer patients. For the models, mucosal microbiome composition and tissue response were evaluated.

Findings: We show that cytokine release and tissue damage were significantly greater in inflamed compared to non-inflamed CD tissues. Moreover, mucosal samples harbouring an initial low microbial load presented a shift in composition towards that of the FS, an increase in the relative count of Faecalibacterium prausnitzii, and a higher secretion of anti-inflammatory cytokine IL-10 compared to those with a high microbial load.

Interpretation: Our results indicate that FMT during active inflammatory disease can compromise treatment outcome. We recommend the stratification of FMT recipients on the basis of tissue microbial load as a strategy to ensure successful colonization.

Funding: This study was supported by grants from the Instituto de Salud Carlos III/FEDER (PI17/00614), the European Commission: (INCOMED-267128) and PERIS (SLT002/16). K.M. is a postdoctoral fellow and S.V. a senior clinical investigator of the Fund for Scientific Research Flanders, Belgium (FWO-Vlaanderen).

Keywords: Anti-inflammatory cytokines; Crohn's disease; FMT; Intestinal microbiome; Microbial load; Recipient stratification.

MeSH terms

  • Animals
  • Crohn Disease / microbiology*
  • Crohn Disease / pathology
  • Cytokines / metabolism
  • Disease Models, Animal
  • Fecal Microbiota Transplantation*
  • Feces / microbiology*
  • Humans
  • Inflammation / microbiology
  • Inflammation / pathology
  • Intestinal Mucosa / microbiology*
  • Intestinal Mucosa / pathology
  • Mice
  • Models, Biological
  • Reproducibility of Results

Substances

  • Cytokines