Structure-activity relationships of fluorene compounds inhibiting HCV variants

Antiviral Res. 2020 Feb:174:104678. doi: 10.1016/j.antiviral.2019.104678. Epub 2019 Dec 17.

Abstract

Approximately 71 million people suffer from hepatitis C virus (HCV) infection worldwide. Persistent HCV infection causes liver diseases such as chronic hepatitis, liver cirrhosis, and hepatocellular carcinoma, resulting in approximately 400,000 deaths annually. Effective direct-acting antiviral agents (DAAs) have been developed and are currently used for HCV treatment targeting the following three proteins: NS3/4A proteinase that cleaves the HCV polyprotein into various functional proteins, RNA-dependent RNA polymerase (designated as NS5B), and NS5A, which is required for the formation of double membrane vesicles serving as RNA replication organelles. At least one compound inhibiting NS5A is included in current HCV treatment regimens due to the high efficacy and low toxicity of drugs targeting NS5A. Here we report fluorene compounds showing strong inhibitory effects on GT 1b and 3a of HCV. Moreover, some compounds were effective against resistance-associated variants to DAAs. The structure-activity relationships of the compounds were analyzed. Furthermore, we investigated the molecular bases of the inhibitory activities of some compounds by the molecular docking method.

Keywords: Direct-acting antiviral agent (DAA); Hepatitis c virus; Molecular docking; NS5A inhibitor; Resistance-associated variant (RAV); Structure-activity relationship (SAR).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antiviral Agents / chemistry
  • Antiviral Agents / pharmacology*
  • Fluorenes / chemistry
  • Fluorenes / pharmacology*
  • Genetic Variation
  • Hepacivirus / drug effects*
  • Hepacivirus / genetics
  • Hepatitis C / drug therapy
  • Humans
  • Intracellular Signaling Peptides and Proteins / antagonists & inhibitors
  • Molecular Docking Simulation
  • Structure-Activity Relationship
  • Viral Nonstructural Proteins / antagonists & inhibitors

Substances

  • Antiviral Agents
  • Fluorenes
  • Intracellular Signaling Peptides and Proteins
  • NS3 protein, hepatitis C virus
  • NS4A cofactor peptide, Hepatitis C virus
  • Viral Nonstructural Proteins
  • NS-5 protein, hepatitis C virus