Genome sequences of chikungunya virus isolates from an outbreak in southwest Bangkok in 2018

Arch Virol. 2020 Feb;165(2):445-450. doi: 10.1007/s00705-019-04509-1. Epub 2019 Dec 13.

Abstract

An outbreak of chikungunya virus (CHIKV) infection occurred in southwest Bangkok during the 2018 rainy season. The envelope glycoprotein E1 gene sequence of the infecting strain belonged to an East/Central/South African lineage with alanine at residue 226. Mutations in the predicted E1 (K211E) and E2 (V264A) proteins of CHIKV were identified in CHIKV-infected patients and in an Aedes aegypti mosquito. Analysis of the complete genome sequences showed marked differences from the strains causing previous outbreaks in Thailand in 2008-2009 and 2013 but showed similarities to strains from more recent CHIKV outbreaks in South and Southeast Asia.

MeSH terms

  • Aedes / virology
  • Animals
  • Base Sequence
  • Chikungunya Fever / virology*
  • Chikungunya virus / genetics*
  • Chikungunya virus / isolation & purification*
  • Disease Outbreaks
  • Female
  • Genome, Viral / genetics
  • Humans
  • Mosquito Vectors / virology
  • Mutation / genetics
  • Phylogeny
  • RNA, Viral / genetics
  • Sequence Analysis, DNA / methods
  • Thailand
  • Viral Envelope Proteins / genetics

Substances

  • RNA, Viral
  • Viral Envelope Proteins