Genome Sequence of the Yeast Saprochaete ingens CBS 517.90

Viktória Hodorová; Hana Lichancová; Stanislav Zubenko; Karolina Sienkiewicz; Sarah Mae U Penir; Philipp Afanasyev; Dominic Boceck; Sarah Bonnin; Siras Hakobyan; Urszula Smyczynska; Erik Zhivkoplias; Maryna Zlatohurska; Eugeniusz Tralle; Alina Frolova; Leszek P Pryszcz; Broňa Brejová; Tomáš Vinař; Jozef Nosek

doi:10.1128/MRA.01366-19

Genome Sequence of the Yeast Saprochaete ingens CBS 517.90

Microbiol Resour Announc. 2019 Dec 12;8(50):e01366-19. doi: 10.1128/MRA.01366-19.

Authors

Viktória Hodorová¹, Hana Lichancová¹, Stanislav Zubenko², Karolina Sienkiewicz³, Sarah Mae U Penir⁴, Philipp Afanasyev⁵, Dominic Boceck⁶, Sarah Bonnin⁷, Siras Hakobyan⁸, Urszula Smyczynska⁹, Erik Zhivkoplias¹⁰, Maryna Zlatohurska¹¹, Eugeniusz Tralle¹², Alina Frolova^{2

13}, Leszek P Pryszcz^{7

12}, Broňa Brejová¹⁴, Tomáš Vinař¹⁵, Jozef Nosek¹⁶

Affiliations

¹ Department of Biochemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovak Republic.
² Kyiv Academic University, Kiev, Ukraine.
³ Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland.
⁴ Department of Meiosis, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
⁵ Laboratory of Evolutionary Genomics, Vavilov Institute of General Genetics, Moscow, Russia.
⁶ Algorithms in Bioinformatics, ZBIT Center for Bioinformatics, University of Tübingen, Tübingen, Germany.
⁷ Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
⁸ Institute of Molecular Biology NAS RA, Yerevan, Armenia.
⁹ Department of Biostatistics and Translational Medicine, Medical University of Lodz, Lodz, Poland.
¹⁰ Biology Education Centre, Uppsala University, Uppsala, Sweden.
¹¹ Institute of Microbiology and Virology, National Academy of Science of Ukraine, Kiev, Ukraine.
¹² International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.
¹³ Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine, Kiev, Ukraine.
¹⁴ Department of Computer Science, Faculty of Mathematics, Physics and Informatics, Comenius University in Bratislava, Bratislava, Slovak Republic brejova@dcs.fmph.uniba.sk jozef.nosek@uniba.sk.
¹⁵ Department of Applied Informatics, Faculty of Mathematics, Physics and Informatics, Comenius University in Bratislava, Bratislava, Slovak Republic.
¹⁶ Department of Biochemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovak Republic brejova@dcs.fmph.uniba.sk jozef.nosek@uniba.sk.

Abstract

Chromosome-scale genome assembly of the yeast Saprochaete ingens CBS 517.90 was determined by a combination of technologies producing short (HiSeq X; Illumina) and long (MinION; Oxford Nanopore Technologies) reads. The 21.2-Mbp genome sequence has a GC content of 36.9% and codes for 6,475 predicted proteins.