Integrated drug profiling and CRISPR screening identify essential pathways for CAR T-cell cytotoxicity

Blood. 2020 Feb 27;135(9):597-609. doi: 10.1182/blood.2019002121.

Abstract

Chimeric antigen receptor (CAR) T-cell therapy has proven effective in relapsed and refractory B-cell malignancies, but resistance and relapses still occur. Better understanding of mechanisms influencing CAR T-cell cytotoxicity and the potential for modulation using small-molecule drugs could improve current immunotherapies. Here, we systematically investigated druggable mechanisms of CAR T-cell cytotoxicity using >500 small-molecule drugs and genome-scale CRISPR-Cas9 loss-of-function screens. We identified several tyrosine kinase inhibitors that inhibit CAR T-cell cytotoxicity by impairing T-cell signaling transcriptional activity. In contrast, the apoptotic modulator drugs SMAC mimetics sensitized B-cell acute lymphoblastic leukemia and diffuse large B-cell lymphoma cells to anti-CD19 CAR T cells. CRISPR screens identified death receptor signaling through FADD and TNFRSF10B (TRAIL-R2) as a key mediator of CAR T-cell cytotoxicity and elucidated the RIPK1-dependent mechanism of sensitization by SMAC mimetics. Death receptor expression varied across genetic subtypes of B-cell malignancies, suggesting a link between mechanisms of CAR T-cell cytotoxicity and cancer genetics. These results implicate death receptor signaling as an important mediator of cancer cell sensitivity to CAR T-cell cytotoxicity, with potential for pharmacological targeting to enhance cancer immunotherapy. The screening data provide a resource of immunomodulatory properties of cancer drugs and genetic mechanisms influencing CAR T-cell cytotoxicity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Tumor
  • Clustered Regularly Interspaced Short Palindromic Repeats
  • Cytotoxicity Tests, Immunologic / methods
  • Cytotoxicity, Immunologic / immunology*
  • Drug Resistance, Neoplasm / immunology*
  • Drug Screening Assays, Antitumor / methods*
  • Humans
  • Immunotherapy, Adoptive / methods*
  • Lymphocyte Activation / immunology
  • Lymphoma, Large B-Cell, Diffuse / immunology
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma / immunology*
  • Receptors, Chimeric Antigen
  • T-Lymphocytes, Cytotoxic / immunology*

Substances

  • Receptors, Chimeric Antigen