On-resin multicomponent 1,3-dipolar cycloaddition of cyclopentanone-proline enamines and sulfonylazides as an efficient tool for the synthesis of amidino depsipeptide mimics

Amino Acids. 2020 Jan;52(1):15-24. doi: 10.1007/s00726-019-02805-3. Epub 2019 Nov 28.

Abstract

Depsipeptides are biologically active peptide derivatives that possess a high therapeutic interest. The development of depsipeptide mimics characterized by a chemical diversity could lead to compounds with enhanced features and activity. In this work, an on-resin multicomponent procedure for the synthesis of amidino depsipeptide mimics is described. This approach exploits a metal-free 1,3-dipolar cycloaddition of cyclopentanone-proline enamines and sulfonylazides. In this reaction, the obtained primary cycloadduct undergoes a ring opening and molecular rearrangement giving access to a linear sulfonyl amidine functionalized with both a peptide chain and a diazoalkane. The so-obtained diazo function "one pot" reacts with the carboxylic group of N-Fmoc-protected amino acids leading to amidino depsipeptide mimics possessing a C4 aliphatic chain. An important advantage of this procedure is the possibility to easily obtain amidino-functionalized derivatives that are proteolytically stable peptide bond bioisosteres. Moreover, the conformational freedom given by the alkyl chain could promote the obtainment of cyclic depsipeptide with a stabilized secondary structure as demonstrated with both in silico calculations and experimental conformational studies. Finally, labeled depsipeptide mimics can be also synthesized using a fluorescent sulfonylazide in the multicomponent reaction.

Keywords: 1,3-Dipolar cycloaddition; Depsipeptide mimics; Multicomponent reaction; Solid-phase synthesis.

MeSH terms

  • Amidines / chemical synthesis*
  • Amidines / chemistry
  • Amines / chemistry
  • Azides / chemistry
  • Cycloaddition Reaction
  • Cyclopentanes / chemical synthesis
  • Cyclopentanes / chemistry*
  • Depsipeptides / chemical synthesis*
  • Depsipeptides / chemistry
  • Proline / chemistry*

Substances

  • Amidines
  • Amines
  • Azides
  • Cyclopentanes
  • Depsipeptides
  • cyclopentanone
  • Proline