Maya gene variants related to the risk of type 2 diabetes in a family-based association study

Gene. 2020 Mar 10:730:144259. doi: 10.1016/j.gene.2019.144259. Epub 2019 Nov 21.

Abstract

Mexican Maya populations have a notably high prevalence of type 2 diabetes (T2D) as a consequence of the interaction between environmental factors and a genetic component. To assess the impact of 24 single nucleotide variants (SNVs) located in 18 T2D risk genes, we conducted a family-based association evaluation in samples from Maya communities with a high incidence of the disease. A total of four hundred individuals were recruited from three Maya communities with a high T2D incidence. Family pedigrees (100) and 49 nuclear families were included. Genotyping was performed by allelic discrimination with TaqMan probes. This study also included the family-based association test (FBAT) statistic U to assess the genetic associations with T2D, and the multivariate statistical and haplotype analyses. A positive association with TD2 risk was found for WFS1 rs6446482 (p = 0.046, Z = 1.994) under an additive model, and SIRT1 rs7896005 (p = 0.038, Z = 2.073) under the dominant model. Multivariate model analysis, including T2D status, age, and body mass index (BMI), displayed significant covariance in PPARGC-1α rs8192678; SIRT1 rs7896005; TCF7L2 rs7903146 and rs122243326; UCP3 rs3781907; and HHEX rs1111875 with a P < 0.05. This study revealed an association of SIRT1 and WFS1 with T2D risk.

Keywords: Family study; Maya; Mexico; Single nucleotide variant; Type 2 diabetes.

MeSH terms

  • Adult
  • Aged
  • Alleles
  • Body Mass Index
  • Case-Control Studies
  • Diabetes Mellitus, Type 2 / genetics*
  • Ethnicity / genetics
  • Family
  • Female
  • Gene Frequency / genetics
  • Genetic Predisposition to Disease / genetics
  • Genetic Variation / genetics
  • Genome-Wide Association Study / methods
  • Genotype
  • Haplotypes
  • Humans
  • Male
  • Membrane Proteins / genetics*
  • Mexico
  • Middle Aged
  • Pedigree
  • Polymorphism, Single Nucleotide / genetics
  • Population Groups / genetics
  • Risk Factors
  • Sirtuin 1 / genetics*

Substances

  • Membrane Proteins
  • wolframin protein
  • SIRT1 protein, human
  • Sirtuin 1